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Subject: [ E-CFP ] BioNLP 2013 Call for papers
From: <Paul.Thompson_(on)_manchester.ac.uk>
Date received: 18 Mar 2013
Deadline: 26 Apr 2013
Start date: 08 Aug 2013





Apologies for cross-postings.

BioNLP 2013

http://compbio.ucdenver.edu/BioNLP2013/index.shtml

BioNLP 2013 is the twelfth workshop on biomedical natural
language processing being held in conjunction with the annual ACL
or NAACL meeting. BioNLP 2013 will be held at the ACL 2013
meeting in Sofia, Bulgaria, under the auspices of SIGBIOMED, the
ACL's special interest group for biomedical natural language
processing. The meeting will be held August 8-9, 2013. The second
day of the meeting will be devoted to the BioNLP Shared Task 2013
(BioNLP-ST 2013). Paper submissions for the shared task are
handled separately. Please see the BioNLP-ST 2013 web site for
further information. The meeting will feature a keynote speech by
Dr. Galia Angelova of the Bulgarian Academy of Sciences.

Sponsors

BioNLP 2013 is sponsored by the Cincinnati Children's Hospial
Medical Center Division of Biomedical Informatics.

Are you also interested in being a sponsor for BioNLP 2013?
Contact us at kevin full-stop cohen ?????? gmail full-stop com or
ddemner ?????? gmail full-stop com.

Call for Papers

Over the course of the past eleven years, the ACL BioNLP workshop
associated with the SIGBIOMED special interest group has
established itself as the primary venue for presenting
foundational research in language processing for the biological
and medical domains. The workshop serves as both a venue for
bringing together researchers in biological and clinical NLP and
exposing these researchers to the mainstream ACL research, and a
venue for informing the mainstream ACL researchers about this
fast-growing and important domain. The workshop will continue
presenting work on a broad and interesting range of topics in
NLP. Along with accepting submissions this year on any topic of
current interest in the field, we will encourage submissions on
theoretical aspects of biomedical language processing. We
especially encourage submissions on:

 Entity identification and normalization for a broad range of
semantic categories  Species-independent gene normalization 
Extraction of complex relations  Discourse analysis  Anaphora
resolution  Coreference resolution  Text mining  Summarization
 Question answering  Resources and novel strategies for system
testing and evaluation  Hybrid approaches to biomedical language
processing  Processing and annotation platforms  Translation of
basic linguistic research to clinical care  Domain adaptation 
Temporality  Theoretical underpinnings of biomedical natural
language processing

Important dates

Submission deadline: Friday, April 26, 2013 Notification of
acceptance: Friday, May 24, 2013 Camera-ready copy due from
authors: Friday, June 7, 2013 Workshop: August 8-9, 2013

Submission instructions

Two types of submissions are invited: full papers and posters.
Submissions are due by 11:59 PM EST on Friday April 26, 2013.
Please submit your paper via the ACL START site for BioNLP 2013:
https://www.softconf.com/acl2013/BioNLP2013/

Full papers should not exceed eight (8) pages of text and one
page of references. These are intended to be reports of original
research. BioNLP aims to be the forum for interesting,
innovative, and promising work involving biomedicine and language
technology, whether or not yielding high performance at the
moment. This by no means precludes our interest in and preference
for mature results, strong performance, and thorough evaluation.
Both types of research and combinations thereof are encouraged.

Poster abstracts should not exceed four (4) pages including
references. Accepted poster abstracts will be published in a
separate section of the workshop proceedings. Appropriate poster
topics include preliminary results, application notes,
descriptions of work in progress, etc.

Submissions must be electronic and in PDF format, and should
follow the two-column format of ACL proceedings. Please see the
conference website for details. Authors are strongly encouraged
to use the style files and formatting instructions available on
the conference website:

http://acl2013.org/site/call.html (scroll down)

Submissions need to be anonymous. Authors who cannot submit a PDF
file electronically should contact the workshop organizers well
in advance of the submission deadline.

Submissions for the BioNLP-ST 2013 shared task: Submissions for
the BioNLP-ST 2013 shared task are handled separately and should
be submitted through the web site at http://2013.bionlp-st.org/.

Dual submission policy: note that papers may NOT be submitted to
the BioNLP 2013 workshop if they are or will be concurrently
submitted to another meeting or publication.

Program committee

The organizing committee for BioNLP 2013 is:

 Kevin Bretonnel Cohen, Computational Bioscience Program,
University of Colorado School of Medicine  Dina Demner-Fushman,
Lister Hill National Center for Biomedical Communications 
Sophia Ananiadou, University of Manchester and UK National Centre
for Text Mining  John Pestian, Computational Medicine Center,
University of Cincinnati, Cincinnati Children's Hospital Medical
Center  Jun'ichi Tsujii, Microsoft Research and UK National
Centre for Text Mining

The program committee for BioNLP 2013 comprises a strong set of
BioNLP researchers from North America, Europe, and Asia:

 Galia Angelova, Bulgarian Academy of Sciences  Emilia
Apostolova, DePaul University  Eiji Aramaki, University of
Tokyo, Japan  Alan Aronson, LHNCBC, US National Library of
Medicine  Sabine Bergler, Concordia University  Olivier
Bodenreider, LHNCBC, US National Library of Medicine  Wendy
Chapman, University of California at San Diego  Aaron Cohen,
Oregon Health and Science University  Nigel Collier, National
Institute of Informatics, Japan  Noemie Elhadad, Columbia
University  Marcelo Fiszman, US National Library of Medicine 
Filip Ginter, University of Turku, Finland  Graciela Gonzalez,
Arizona State University  Zhou GuoDong, Ecole Polytechnique
Federal de Lausanne  Su Jian, A-star  Halil Kilicoglu, US
National Library of Medicine  Jin-Dong Kim, Database Center for
Life Science, Japan  Robert Leaman, National Center for
Biotechnology Information  Ulf Leser, Humboldt University,
Germany  Zhiyong Lu, NCBI, US National Library of Medicine 
Makoto Miwa, University of Manchester, UK  Aurelie Neveol, US
National Library of Medicine  Naoaki Okazaki, Tohoku University,
Japan  Serguei Pakhomov, University of Minnesota  Jong C. Park,
Korea Advanced Institute of Science and Technology  Jon Patrick,
University of Sydney, Australia  Rashmi Prasad, University of
Wisconsin-Milwaukee  Sampo Pyysalo, University of Manchester,
National Centre for Text Mining, United Kingdom  Bastien Rance,
LHNCBC, US National Library of Medicine  Fabio Rinaldi,
University of Zurich  Thomas Rindflesch, LHNCBC, US National
Library of Medicine  Daniel Rubin, Stanford University  Andrey
Rzhetsky, U. Chicago  Guergana Savova, Harvard University 
Hagit Shatkay, University of Delaware  Matthew Simpson, LHNCBC,
National Library of Medicine  Pontus Stenetorp, LHNCBC, National
Library of Medicine  Yoshimasa Tsuruoka, University of Tokyo,
Japan  Ozlem Uzuner, Informatics for Integrating Biology and the
Bedside National Center for Biomedical Computing  Karin
Verspoor, NICTA, Australia  Peter White, Children's Hospital of
Philadelphia  W. John Wilbur, NCBI, US National Library of
Medicine  Antonio Jimeno Yepes, NICTA, Australia  Pierre
Zweigenbaum, LIMSI, France
--------

Paul Thompson Research Associate School of Computer Science
National Centre for Text Mining Manchester Institute of
Biotechnology University of Manchester 131 Princess Street
Manchester M1 7DN UK Tel: 0161 306 3091
http://personalpages.manchester.ac.uk/staff/Paul.Thompson/

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